Тема: Исследование CasX нуклеазы из Deltaproteobacteria

1. Anders C., Jinek M. In vitro Enzymology of Cas9 Carolin // 2014. С. 1–20.
2. Bobay L.M., Touchon M., Rocha E.P.C. Manipulating or Superseding Host Recombination
Functions: A Dilemma That Shapes Phage Evolvability // PLoS Genet. 2013. Т. 9. № 9.
3. Brouns S.J.J. и др. Small CRISPR RNAs Guide Antiviral Defense in Prokaryotes // 1996. Т.
272. № June. С. 1641–1643.
4. Burstein D. и др. New CRISPR–Cas systems from uncultivated microbes microbes // Nat.
Publ. Gr. 2017. Т. 542. № 7640. С. 237–241.
5. Cong L. и др. Multiplex Genome Engineering Using CRISPR/Cas Systems // Science (80-. ).2013.
6. Davies C. и др. Cas1-Cas2 complex formation mediates spacer acquisition during CRISPRCas adaptive immunity // Nat. Struct. Mol. Biol. 2014. Т. 21. № 6. С. 528–534.
7. Deltcheva E. и др. CRISPR RNA maturation by trans-encoded small RNA and host factor //
2011. Т. 471. № 7340. С. 602–607.
8. Díez-villaseñor C. и др. CRISPR-spacer integration reporter plasmids reveal distinct genuine
acquisition specificities among CRISPR-Cas I-E variants of Escherichia coli // 2013. Т. 10. № 5.
С. 792–802.
9. Doudna J.A., Charpentier and E. The new frontier of genome engineering with CRISPR-Cas9
// 2014. Т. 346. № 6213.
10. Dy R.L. и др. A widespread bacteriophage abortive infection system functions through a
Type IV toxin-antitoxin mechanism // Nucleic Acids Res. 2014. Т. 42. № 7. С. 4590–4605.
11. Fonfara I. и др. The CRISPR-associated DNA-cleaving enzyme Cpf1 also processes
precursor CRISPR RNA // Nature. 2016. Т. 532. № 7600. С. 517–521.
12. Gasiunas G. и др. Cas9-crRNA ribonucleoprotein complex mediates specific DNA cleavage
for adaptive immunity in bacteria // Proc. Natl. Acad. Sci. 2012. Т. 109. № 39. С. E2579–E2586.
13. Guha T.K., Wai A., Hausner G. Programmable Genome Editing Tools and their Regulation
for Efficient Genome Engineering // Comput. Struct. Biotechnol. J. 2017. Т. 15. С. 146–160.
14. Hatoum-aslan A. и др. Co-transcriptional DNA and RNA Cleavage during Co50
transcriptional DNA and RNA Cleavage during Type III CRISPR-Cas Immunity // Cell. 2015. Т.
161. № 5. С. 1164–1174.
15. James K. Nuñez, Amy S.Y. Lee A.E. and J.A.D. Integrase-mediated spacer acquisition
during CRISPR-Cas adaptive immunity // Nature. 2015. Т. 519. № Xxxxx. С. 193–198.
16. Jinek M. и др. A Programmable Dual-RNA – Guided // 2012. Т. 337. № August. С. 816–
822.
17. Jinek M. и др. RNA-programmed genome editing in human cells // Elife. 2013. Т. 2. С. 1–9.
18. Jinek M. и др. Structures of Cas9 Endonucleases Reveal RNA-Mediated Conformational
Activation // Science (80-. ). 2014. Т. 343. № 6176. С. 1–28.
19. Kapust R.B., Waugh D.S. Escherichia coli maltose-binding protein is uncommonly effective
at promoting the solubility of polypeptides to which it is fused // 1999. С. 1668–1674.
20. Karvelis T., Gasiunas G., Siksnys V. Programmable DNA cleavage in vitro by Cas9 //
Biochem. Soc. Trans. 2013. Т. 41. № 6. С. 1401–1406.
21. Kunin V., Sorek R., Hugenholtz P. Evolutionary conservation of sequence and secondary
structures in CRISPR repeats // Genome Biol. 2007. Т. 8. № 4.
22. Lämmli U.K. Cleavage of Structural Proteins during the Assembly of the Head of
Bacteriophage T4 // Nature. 1970. Т. 227. № 5259. С. 680–685.
23. Levy A. и др. CRISPR adaptation biases explain preference for acquisition of foreign DNA
// 2015. Т. 520. № 7548. С. 505–510.
24. Liu J.-J. и др. CasX enzymes comprise a distinct family of RNA-guided genome editors //
Nature. 2019.
25. Liu Y. и др. In Vitro CRISPR / Cas9 System for Efficient Targeted DNA Editing // MBio.
2015. Т. 6. № Q. С. Q.
26. Makarova K.S. и др. An updated evolutionary classification of CRISPR–Cas systems //
2015. Т. 13. № 11. С. 722–736.
27. Malzahn A.A. и др. Application of CRISPR-Cas12a temperature sensitivity for improved
genome editing in rice, maize, and Arabidopsis // BMC Biol. 2019. Т. 17. № 1. С. 1–14.
28. Mougiakos I. и др. Characterizing a thermostable Cas9 for bacterial genome editing and51
silencing // Nat. Commun. 2017. Т. 8. № 1.
29. Nishimasu H. и др. Crystal Structure of Cas9 in Complex with Guide RNA and Target DNA
// 2016. Т. 118. № 24. С. 6072–6078.
30. Ofir G. и др. DISARM is a widespread bacterial defence system with broad anti-phage
activities // Nat. Microbiol. 2018. Т. 3. № 1. С. 90–98.
31. Özcan A. и др. Type IV CRISPR RNA processing and effector complex formation in
Aromatoleum aromaticum // Nat. Microbiol. 2019. Т. 4. № 1. С. 89–96.
32. Ryan N. Jackson B.W. A conserved structural chassis for mounting versatile CRISPR RNAguided immune responses // 2015. Т. 40. № 4. С. 1291–1296.
33. Sapranauskas R. и др. The Streptococcus thermophilus CRISPR/Cas system provides
immunity in Escherichia coli // Nucleic Acids Res. 2011. Т. 39. № 21. С. 9275–9282.
34. Shmakov S. и др. Discovery and Functional Characterization of Article Discovery and
Functional Characterization of Diverse Class 2 CRISPR-Cas Systems // Mol. Cell. 2015. С. 1–
13.
35. Silas S. и др. Direct CRISPR spacer acquisition from RNA by a natural reverse
transcriptase-Cas1 fusion protein // Science (80-. ). 2016. Т. 351. № 6276.
36. Silas S. и др. On the Origin of Reverse Transcriptase-Using CRISPR-Cas Systems and Their
Hyperdiverse, Enigmatic Spacer Repertoires // MBio. 2017. Т. 8. № 4.
37. Takeuchi N. и др. Nature and intensity of selection pressure on crispr-associated genes // J.
Bacteriol. 2012. Т. 194. № 5. С. 1216–1225.
38. Tang L. и др. CRISPR/Cas9-mediated gene editing in human zygotes using Cas9 protein //
Mol. Genet. Genomics. 2017. Т. 292. № 3. С. 525–533.
39. Wang J. и др. Structural and Mechanistic Basis of PAM-Dependent Spacer Acquisition in
CRISPR-Cas Systems // Cell. 2015. Т. 163. № 4. С. 840–853.
40. Wei Y. и др. Sequences spanning the leader-repeat junction mediate CRISPR adaptation to
phage in Streptococcus thermophilus // Nucleic Acids Res. 2015. Т. 43. № 3. С. 1749–1758.
41. Wei Y., Terns R.M., Terns M.P. Cas9 function and host genome sampling in type II-A
CRISPR–cas adaptation // Genes Dev. 2015. Т. 29. № 4. С. 356–361.52
42. Westra E.R. и др. CRISPR Immunity Relies on the Consecutive Binding and Degradation of
Negatively Supercoiled Invader DNA by Cascade and Cas3 // Mol. Cell. 2012. Т. 46. № 5. С.
595–605.
43. Westra E.R., Buckling A., Fineran P.C. CRISPR-Cas systems: Beyond adaptive immunity //
Nat. Rev. Microbiol. 2014. Т. 12. № 5. С. 317–326.
44. Xue W. и др. CRISPR-mediated direct mutation of cancer genes in the mouse liver Wen //
2015. Т. 344. № 6188. С. 1173–1178.
45. Yamano T. и др. Crystal structure of Cpf1 in complex with guide RNA and target DNA //
Acta Crystallogr. Sect. D Struct. Biol. 2016. Т. 165. № 4. С. 949–962.
46. Yao R. и др. CRISPR-Cas9/Cas12a biotechnology and application in bacteria // Synth. Syst.
Biotechnol. 2018. Т. 3. № 3. С. 135–149.
47. Yosef I., Goren M.G., Qimron U. Proteins and DNA elements essential for the CRISPR
adaptation process in Escherichia coli // Nucleic Acids Res. 2012. Т. 40. № 12. С. 5569–5576.
48. Zetsche B. и др. Cpf1 Is a Single RNA-Guided Endonuclease of a Class 2 CRISPR-Cas
System // Cell. 2015. Т. 163. № 3. С. 759–771.
49. Zhou Y. и др. High-throughput screening of a CRISPR/Cas9 library for functional genomics
in human cells // Nature. 2014. Т. 509. № 7501. С. 487–491.
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