Тема: Локализация рецепторов PXY, CRN и CLV2 в корне редиса (Raphanus sativus L.)

1. Etchells J.P. et al A brief history of the TDIF-PXY signalling module: Balancing meristem
identity and differentiation during vascular development // New Phytol. 2016. Т. 209. № 2. С.
474–484.
2. Somssich M. et al CLAVATA-WUSCHEL signaling in the shoot meristem // Development.
2016. Т. 143. № 18. С. 3238–3248.
3. Dodueva I.E. et al Plant stem cells: unity and diversity // Vavilov J. Genet. Breed. 2016. Т. 20.
№ 4. С. 441–458.
4. Coninck B. De, Smet I. De. Plant peptides - Taking them to the next level // J. Exp. Bot. 2016.
Т. 67. № 16. С. 4791–4795.
5. Cho H. et al A secreted peptide acts on BIN2-mediated phosphorylation of ARFs to potentiate
auxin response during lateral root development // Nat. Cell Biol. 2013. Т. 16. № 1. С. 66–76.
6. Etchells J.P., Turner S.R. The PXY-CLE41 receptor ligand pair defines a multifunctional
pathway that controls the rate and orientation of vascular cell division // Development. 2010. Т.
137. № 5. С. 767–774.
7. Song S.-K., Lee M.M., Clark S.E. POL and PLL1 phosphatases are CLAVATA1 signaling
intermediates required for Arabidopsis shoot and floral stem cells // Development. 2006. Т. 133.
№ 23. С. 4691–4698.
8. Hirakawa Y., Kondo Y., Fukuda H. TDIF Peptide Signaling Regulates Vascular Stem Cell
Proliferation via the WOX4 Homeobox Gene in Arabidopsis // Plant Cell. 2010. Т. 22. № 8. С.
2618–2629.
9. Fisher K., Turner S. PXY, a Receptor-like Kinase Essential for Maintaining Polarity during
Plant Vascular-Tissue Development // Curr. Biol. 2007. Т. 17. № 12. С. 1061–1066.
10. Etchells J.P., Provost C.M., Turner S.R. Plant Vascular Cell Division Is Maintained by an
Interaction between PXY and Ethylene Signalling // PLoS Genet. 2012. Т. 8. № 11.
11. Додуева И.Е. et al CLE ПЕПТИДЫ – УНИВЕРСАЛЬНЫЕ РЕГУЛЯТОРЫ РАЗВИТИЯ
МЕРИСТЕМ // Физиология растений. 2012. Т. 59. № 1. С. 17–31.
12. Xu C. et al A cascade of arabinosyltransferases controls shoot meristem size in tomato // Nat.
Genet. 2015. Т. 47. № 7. С. 784–792.
13. Shinohara H., Matsubayashi Y. Chemical synthesis of arabidopsis CLV3 glycopeptide reveals
the impact of hydroxyproline arabinosylation on peptide conformation and activity // Plant Cell
Physiol. 2013. Т. 54. № 3. С. 369–374.
14. Somssich M. et al Real-time dynamics of peptide ligand-dependent receptor complex56
formation in planta // Sci. Signal. 2015. Т. 8. № 388. С. ra76-ra76.
15. Goad D.M., Zhu C., Kellogg E.A. Comprehensive identification and clustering of
CLV3/ESR-related (CLE) genes in plants finds groups with potentially shared function // New
Phytol. 2016. Т. 2.
16. Smakowska-Luzan E. et al An extracellular network of Arabidopsis leucine-rich repeat
receptor kinases // Nature. 2018. Т. 553. № 7688. С. 342–346.
17. Ishida T. et al Heterotrimeric G proteins control stem cell proliferation through CLAVATA
signaling in Arabidopsis. // EMBO Rep. 2014. Т. 15. № 11. С. 1202–9.
18. Kayes J.M., Clark S.E. CLAVATA2, a regulator of meristem and organ development in
Arabidopsis. // Development. 1998. Т. 125. № 19. С. 3843–3851.
19. Shinohara H., Matsubayashi Y. Reevaluation of the CLV3-receptor interaction in the shoot
apical meristem: Dissection of the CLV3 signaling pathway from a direct ligand-binding point of
view // Plant J. 2015. Т. 82. № 2. С. 328–336.
20. Somssich M., Bleckmann A., Simon R. Shared and distinct functions of the pseudokinase
CORYNE (CRN) in shoot and root stem cell maintenance of Arabidopsis // J. Exp. Bot. 2016. Т.
67. № 16. С. 4901–4915.
21. Shiu S.-H., Bleecker A.B. Receptor-like kinases from Arabidopsis form a monophyletic gene
family related to animal receptor kinases // Proc. Natl. Acad. Sci. 2001. Т. 98. № 19. С. 10763–
10768.
22. Whitford R. et al Plant CLE peptides from two distinct functional classes synergistically
induce division of vascular cells // Proc. Natl. Acad. Sci. 2008. Т. 105. № 47. С. 18625–18630.
23. Gancheva M.S. et al Identification, expression, and functional analysis of CLE genes in
radish (Raphanus sativus L.) storage root // BMC Plant Biol. 2016. Т. 16. № S1. С. 7.
24. Il’ina E.L. et al The effect of cytokinins on in vitro cultured inbred lines of Raphanus sativus
var. radicula Pers. with genetically determined tumorigenesis // Russ. J. Plant Physiol. 2006. Т.
53. № 4. С. 514–522.
25. Doonan J.H., Sablowski R. Walls around tumours -why plants do not develop cancer // Nat.
Rev. Cancer. 2010. Т. 10. № 11. С. 794–802.
26. Pan L. et al The Multifunction of CLAVATA2 in Plant Development and Immunity // Front.
Plant Sci. 2016. Т. 7. № October. С. 1573.
27. Peláez P. et al Small RNAs Derived from the T-DNA of Agrobacterium rhizogenes in Hairy
Roots of Phaseolus vulgaris // Front. Plant Sci. 2017. Т. 8. № February. С. 1–13.
28. Gaillochet C., Daum G., Lohmann J.U. O Cell, Where Art Thou? The mechanisms of shoot
meristem patterning // Curr. Opin. Plant Biol. 2015. Т. 23. С. 91–97.
29. Sugimoto K., Jiao Y., Meyerowitz E.M. Arabidopsis regeneration from multiple tissues57
occurs via a root development pathway. // Dev. Cell. 2010. Т. 18. № 3. С. 463–471.
30. Muller R., Bleckmann A., Simon R. The Receptor Kinase CORYNE of Arabidopsis
Transmits the Stem Cell-Limiting Signal CLAVATA3 Independently of CLAVATA1 // Plant Cell
Online. 2008. Т. 20. № 4. С. 934–946.
31. Wei Z. et al Identification and expression analysis of the LRR-RLK gene family in tomato
(Solanum lycopersicum) Heinz 1706. // Genome. 2015. Т. 58. № 4. С. 121–34.
32. Nimchuk Z.L., Tarr P.T., Meyerowitz E.M. An Evolutionarily Conserved Pseudokinase
Mediates Stem Cell Production in Plants // Plant Cell. 2011. Т. 23. № 3. С. 851–854.
33. Kucukoglu M., Nilsson O. CLE peptide signaling in plants - the power of moving around //
Physiol. Plant. 2015. Т. 155. № 1. С. 74–87.
34. Iwase A. et al Report The AP2 / ERF Transcription Factor WIND1 Controls Cell
Dedifferentiation in Arabidopsis // Curr. Biol. 2011. Т. 21. № 6. С. 508–514.
35. Ikeuchi M., Sugimoto K., Iwase A. Plant Callus: Mechanisms of Induction and Repression //
Plant Cell. 2013. Т. 25. № 9. С. 3159–3173.
36. Dodueva I., Frolova N., Lutova L. Plant tumorigenesis: different ways for shifting systemic
control of plant cell division and differentiation // Transgen. Plant J. 2007. Т. 1. С. 17–38.
37. Sun J. et al Genome-wide characterization, evolution, and expression analysis of the leucinerich repeat receptor-like protein kinase (LRR-RLK) gene family in Rosaceae genomes // BMC
Genomics. 2017. Т. 18. № 1.
38. Etchells J.P. et al WOX4 and WOX14 act downstream of the PXY receptor kinase to regulate
plant vascular proliferation independently of any role in vascular organisation // Development.
2013. Т. 140. № 10. С. 2224–2234.
39. Suer S. et al WOX4 Imparts Auxin Responsiveness to Cambium Cells in Arabidopsis // Plant
Cell Online. 2011. Т. 23. № 9. С. 3247–3259.
40. Ahmed M., Kim D.R. pcr: an R package for quality assessment, analysis and testing of qPCR
data // PeerJ. 2018. Т. 6. С. e4473.
41. Ahuja M.R. Genetic tumors in Nicotiana and other plants // Q. Rev. Biol. 1998. Т. 73. № 4.
С. 439–462.
42. Al-Shehbaz I.A., Beilstein M.A., Kellogg E.A. Systematics and phylogeny of the
Brassicaceae (Cruciferae): An overview // Plant Systematics and Evolution. , 2006. С. 89–120.
43. Ali M.A. et al Smart Parasitic Nematodes Use Multifaceted Strategies to Parasitize Plants //
Front. Plant Sci. 2017. Т. 8.
44. Altschul S.F. et al Basic local alignment search tool. // J. Mol. Biol. 1990. Т. 215. № 3. С.
403–10.
45. Andrews S.J., Rothnagel J.A. Emerging evidence for functional peptides encoded by short58
open reading frames // Nat. Rev. Genet. 2014. Т. 15. № 3. С. 193–204.
46. Arnim A.G. Von, Jia Q., Vaughn J.N. Regulation of plant translation by upstream open
reading frames // Plant Sci. 2014. Т. 214. С. 1–12.
47. Ascencio-Ibanez J.T. et al Global Analysis of Arabidopsis Gene Expression Uncovers a
Complex Array of Changes Impacting Pathogen Response and Cell Cycle during Geminivirus
Infection // PLANT Physiol. 2008. Т. 148. № 1. С. 436–454.
48. Berardini T.Z. et al The arabidopsis information resource: Making and mining the «gold
standard» annotated reference plant genome // Genesis. 2015. Т. 53. № 8. С. 474–485.
49. Berckmans B. et al Auxin-Dependent Cell Cycle Reactivation through Transcriptional
Regulation of Arabidopsis E2Fa by Lateral Organ Boundary Proteins // Plant Cell. 2011. Т. 23.
№ 10. С. 3671–3683.
50. Betsuyaku S. et al Mitogen-activated protein kinase regulated by the CLAVATA receptors
contributes to shoot apical meristem homeostasis // Plant Cell Physiol. 2011. Т. 52. № 1. С. 14–
29.
51. Bhattacharjee S. et al IMPa-4, an Arabidopsis Importin Isoform, Is Preferentially Involved
in Agrobacterium-Mediated Plant Transformation // PLANT CELL ONLINE. 2008. Т. 20. № 10.
С. 2661–2680.
52. Bielach A., Hrtyan M., Tognetti V.B. Plants under stress: Involvement of auxin and cytokinin
// Int. J. Mol. Sci. 2017. Т. 18. № 7.
53. Bircheneder S., Dresselhaus T. Why cellular communication during plant reproduction is
particularly mediated by CRP signalling // J. Exp. Bot. 2016. Т. 67. № 16. С. 4849–4861.
54. Bird D.M., Koltai H. Plant Parasitic Nematodes: Habitats, Hormones, and HorizontallyAcquired Genes. // J. Plant Growth Regul. 2000. Т. 19. № 2. С. 183–194.
55. Brencic A., Eberhard A., Winans S.C. Signal quenching, detoxification and mineralization of
vir gene-inducing phenolics by the VirH2 protein of Agrobacterium tumefaciens // Mol.
Microbiol. 2004. Т. 51. № 4. С. 1103–1115.
56. Buzovkina I.S., Lutova L.A. The genetic collection of radish inbred lines: history and
prospects // Genetika. 2007. Т. 43. № 10. С. 1411–1423.
57. Cai X.T. et al Arabidopsis ERF109 mediates cross-talk between jasmonic acid and auxin
biosynthesis during lateral root formation // Nat. Commun. 2014. Т. 5.
58. Cangelosi G.A., Ankenbauer R.G., Nester E.W. Sugars induce the Agrobacterium virulence
genes through a periplasmic binding protein and a transmembrane signal protein. // Proc. Natl.
Acad. Sci. 1990. Т. 87. № 17. С. 6708–6712.
59. Casamitjana-Martínez E. et al Root-specific CLE19 overexpression and the so1l/2
suppressors implicate a CLV-like pathway in the control of Arabidopsis root meristem59
maintenance // Curr. Biol. 2003. Т. 13. № 16. С. 1435–1441.
60. Chaturvedi P. Inhibitory response of Raphanus sativus on lipid peroxidation in albino rats //
Evidence-based Complement. Altern. Med. 2008. Т. 5. № 1. С. 55–59.
61. Chen M.-K. et al ERECTA Family Genes Regulate Auxin Transport in the Shoot Apical
Meristem and Forming Leaf Primordia // PLANT Physiol. 2013. Т. 162. № 4. С. 1978–1991.
62. Chinchilla D. et al A flagellin-induced complex of the receptor FLS2 and BAK1 initiates
plant defence // Nature. 2007. Т. 448. № 7152. С. 497–500.
63. Chung K.R., Tzeng D.D. Biosynthesis of Indole-3-Acetic Acid by the Gall-inducing Fungus
Ustilago esculenta // J. Biol. Sci. 2004. Т. 4. № 6. С. 744–750.
64. Cissé O.H. et al Genome sequencing of the plant pathogen Taphrina deformans, the causal
agent of peach leaf curl // MBio. 2013. Т. 4. № 3.
65. Clark S., Running M., Meyerowitz E. CLAVATA3 is a specific regulator of shoot and floral
meristem development affecting the same processes as CLAVATA1 // Development. 1995. Т. 121.
С. 2057–2067.
66. Clark S.E., Running M.P., Meyerowitz E.M. CLAVATA1, a regulator of meristem and flower
development in Arabidopsis. // Development. 1993. Т. 119. № 2. С. 397–418.
67. Cock J.M., McCormick S. A Large Family of Genes That Share Homology withCLAVATA3
// Plant Physiol. 2001. Т. 126. № 3. С. 939–942.
68. Curtis I.S. The noble radish: Past, present and future // Trends Plant Sci. 2003. Т. 8. № 7. С.
305–307.
69. Czyzewicz N. et al Message in a bottle: Small signalling peptide outputs during growth and
development // J. Exp. Bot. 2013. Т. 64. № 17. С. 5281–5296.
70. Daum G. et al A mechanistic framework for noncell autonomous stem cell induction in
Arabidopsis // Proc. Natl. Acad. Sci. 2014. Т. 111. № 40. С. 14619–14624.
71. Desvoyes B. et al Cell Type-Specific Role of the Retinoblastoma / E2F Pathway during
Arabidopsis Leaf Development 1 // Plant Physiol. 2005. Т. 140. № January. С. 1–14.
72. Devos S. et al Infection of Chinese cabbage by Plasmodiophora brassicae leads to a
stimulation of plant growth: Impacts on cell wall metabolism and hormone balance // New
Phytol. 2005. Т. 166. № 1. С. 241–250.
73. Doss R.P. et al Bruchins: Insect-derived plant regulators that stimulate neoplasm formation //
Proc. Natl. Acad. Sci. 2000. Т. 97. № 11. С. 6218–6223.
74. Duan M. et al Identification of Optimal Reference Genes for Expression Analysis in Radish
(Raphanus sativus L.) and Its Relatives Based on Expression Stability // Front. Plant Sci. 2017.
Т. 8.
75. Durbak A.R., Tax F.E. CLAVATA signaling pathway receptors of arabidopsis regulate cell60
proliferation in fruit organ formation as well as in meristems // Genetics. 2011. Т. 189. № 1. С.
177–194.
76. Faure J.D. et al The PASTICCINO genes of Arabidopsis thaliana are involved in the control
of cell division and differentiation // DEVELOPMENT. 1998. Т. 125. № 5. С. 909–918.
77. Fernando W.G.D. et al Molecular and morphological characteristics of Apiosporina morbosa,
the causal agent of black knot in Prunus spp. // Can. J. Plant Pathol. 2005. Т. 27. № 3. С. 364–
375.
78. Fiers M. et al Mis-expression of the CLV3/ESR-like gene CLE19 in Arabidopsis leads to a
consumption of root meristem // Gene. 2004. Т. 327. № 1. С. 37–49.
79. Frank M. et al Hormone autotrophic growth and differentiation identifies mutant lines of
Arabidopsis with altered cytokinin and auxin content or signaling. // Plant Physiol. 2000. Т. 122.
№ 3. С. 721–9.
80. Frank M. et al Tumorous shoot development (tsd) genes are required for co-ordinated plant
shoot development // Plant J. 2002. Т. 29. № 1. С. 73–85.
81. Gifford M.L. The Arabidopsis ACR4 gene plays a role in cell layer organisation during ovule
integument and sepal margin development // Development. 2003. Т. 130. № 18. С. 4249–4258.
82. Goldraij A. et al Compartmentalization of S-RNase and HT-B degradation in selfincompatible Nicotiana // Nature. 2006. Т. 439. № 7078. С. 805–810.
83. Gordon J.E., Christie P.J. The Agrobacterium Ti Plasmids // Microbiol. Spectr. 2014. Т. 2. №
6.
84. Gorres K.L., Raines R.T. Prolyl 4-Hydroxylase. , 2010. 106-124 с.
85. Gou X. et al Genome-wide cloning and sequence analysis of leucine-rich repeat receptor-like
protein kinase genes in Arabidopsis thaliana // BMC Genomics. 2010. Т. 11. № 1. С. 19.
86. Gou X. et al Genetic evidence for an indispensable role of somatic embryogenesis receptor
kinases in brassinosteroid signaling // PLoS Genet. 2012. Т. 8. № 1.
87. Guo Y. et al CLAVATA2 forms a distinct CLE-binding receptor complex regulating
Arabidopsis stem cell specification // Plant J. 2010. Т. 63. № 6. С. 889–900.
88. Gutierrez C. DNA replication and cell cycle in plants: Learning from geminiviruses // EMBO
J. 2000. Т. 19. № 5. С. 792–799.
89. Gutiérrez R.M.P., Perez R.L. Raphanus sativus (Radish): Their Chemistry and Biology // Sci.
World J. 2004. Т. 4. С. 811–837.
90. Hanemian M. et al Arabidopsis CLAVATA1 and CLAVATA2 receptors contribute
to Ralstonia solanacearum pathogenicity through a miR169-dependent pathway // New Phytol.
2016. Т. 211. № 2. С. 502–515.
91. Hara K. et al The secretory peptide gene EPF1 enforces the stomatal one-cell-spacing rule //61
Genes Dev. 2007. Т. 21. № 14. С. 1720–1725.
92. Hastwell A.H., Gresshoff P.M., Ferguson B.J. Genome-wide annotation and characterization
of CLAVATA/ESR (CLE) peptide hormones of soybean (Glycine max) and common bean
(Phaseolus vulgaris), and their orthologues of Arabidopsis thaliana // J. Exp. Bot. 2015. Т. 66. №
17. С. 5271–5287.
93. Hazak O. et al Perception of root‐active CLE peptides requires CORYNE function in the
phloem vasculature // EMBO Rep. 2017. Т. 18. № 8. С. 1367–1381.
94. Herrera-Estrella A. et al VirD proteins of Agrobacterium tumefaciens are required for the
formation of a covalent DNA--protein complex at the 5’ terminus of T-strand molecules //
EMBO J. 1988. Т. 7. № 13. С. 4055–4062.
95. Hirakawa Y. et al Non-cell-autonomous control of vascular stem cell fate by a CLE
peptide/receptor system // Proc. Natl. Acad. Sci. 2008. Т. 105. № 39. С. 15208–15213.
96. Hirakawa Y., Bowman J.L. A Role of TDIF Peptide Signaling in Vascular Cell Differentiation
is Conserved Among Euphyllophytes // Front. Plant Sci. 2015. Т. 6.
97. Huang C.H. et al Resolution of brassicaceae phylogeny using nuclear genes uncovers nested
radiations and supports convergent morphological evolution // Mol. Biol. Evol. 2016. Т. 33. № 2.
С. 394–412.
98. Ilina E.L. et al. Lateral root initiation and formation within the parental root meristem of
Cucurbita pepo : is auxin a key player ? // Ann. Bot. 2018. № April. С. 1–16.
99. Initiative T.A.G. Analysis of the genome sequence of the flowering plant Arabidopsis
thaliana // Nature. 2000. Т. 408. № 6814. С. 796–815.
100. Intrieri M.C., Buiatti M. The horizontal transfer of Agrobacterium rhizogenes genes and the
evolution of the genus Nicotiana // Mol. Phylogenet. Evol. 2001. Т. 20. № 1. С. 100–110.
101. Ito Y. et al Dodeca-CLE as peptides as suppressors of plant stem cell differentiation //
Science (80-. ). 2006. Т. 313. № 5788. С. 842–845.
102. Jang G. et al Cytokinin-dependent secondary growth determines root biomass in radish
(Raphanus sativus L.). // J. Exp. Bot. 2015. Т. 66. № 15. С. 4607–19.
103. Jiang F. et al Involvement of Plant Stem Cells or Stem Cell-Like Cells in Dedifferentiation
// Front. Plant Sci. 2015. Т. 6.
104. Johnson R. et al Detection and quantitation of octopine in normal plant tissue and in crown
gall tumors // Proc. Natl. Acad. Sci. U. S. A. 1974. Т. 71. № 2. С. 536–539.
105. Katzen F. Gateway ® recombinational cloning: a biological operating system // Expert Opin.
Drug Discov. 2007. Т. 2. № 4. С. 571–589.
106. Kerr A. Transfer of virulence between isolates of agrobacterium // Nature. 1969. Т. 223. №
5211. С. 1175–1176.62
107. Kiba T. et al The type-A response regulator, ARR15, acts as a negative regulator in the
cytokinin-mediated signal transduction in Arabidopsis thaliana // Plant Cell Physiol. 2003. Т. 44.
№ 8. С. 868–874.
108. Kim Y.S. et al CHRK1, a chitinase-related receptor-like kinase in tobacco. // Plant Physiol.
2000. Т. 123. № 3. С. 905–915.
109. Kondo T. et al Dual assay for MCLV3 activity reveals structure-activity relationship of CLE
peptides // Biochem. Biophys. Res. Commun. 2008. Т. 377. № 1. С. 312–316.
110. Kondo Y. et al CLE peptides can negatively regulate protoxylem vessel formation via
cytokinin signaling // Plant Cell Physiol. 2011. Т. 52. № 1. С. 37–48.
111. Kondo Y. et al Plant GSK3 proteins regulate xylem cell differentiation downstream of
TDIF-TDR signalling. // Nat. Commun. 2014. Т. 5. С. 3504.
112. Kondo Y. et al A novel system for xylem cell differentiation in arabidopsis thaliana // Mol.
Plant. 2015. Т. 8. № 4. С. 612–621.
113. Kong Y. et al Tissue-specific expression of SMALL AUXIN UP RNA41 differentially
regulates cell expansion and root meristem patterning in arabidopsis // Plant Cell Physiol. 2013.
Т. 54. № 4. С. 609–621.
114. Kosugi S., Ohashi Y. Constitutive E2F expression in tobacco plants exhibits altered cell
cycle control and morphological change in a cell type-specific manner // Plant Physiol. 2003. Т.
132. № 4. С. 2012–2022.
115. Krupková E. et al The Tumorous Shoot Development2 gene of Arabidopsis encoding a
putative methyltransferase is required for cell adhesion and co-ordinated plant development //
Plant J. 2007. Т. 50. № 4. С. 735–750.
116. Krupková E., Schmülling T. Developmental consequences of the tumorous shoot
development1 mutation, a novel allele of the cellulose-synthesizing KORRIGAN1 gene // Plant
Mol. Biol. 2009. Т. 71. № 6. С. 641–655.
117. Ku A.T. et al IbMADS1 (Ipomoea batatas MADS-box 1 gene) is involved in tuberous root
initiation in sweet potato (Ipomoea batatas) // Ann. Bot. 2008. Т. 102. № 1. С. 57–67.
118. Lammens T. et al Atypical E2Fs: new players in the E2F transcription factor family //
Trends Cell Biol. 2009. Т. 19. № 3. С. 111–118.
119. Latham J.R. et al Induction of plant cell division by beet curly top virus gene C4 // Plant J.
1997. Т. 11. № 6. С. 1273–1283.
120. Lauressergues D. et al Primary transcripts of microRNAs encode regulatory peptides //
Nature. 2015. Т. 520. № 7545. С. 90–93.
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